This initiative was undertaken by our group for the. We previously reported a draft genome assembly of the desi chickpea cultivar icc 4958. Antifungal and antiproliferative protein from cicer. Genomewide identification and expression analysis of two component system genes in cicer arietinum author links open overlay panel bilal ahmad a 1 farrukh azeem a 1 muhammad amjad ali b c muhammad amjad nawaz d habibullah nadeem a amjad abbas b riffat batool e rana muhammad atif f g usman ijaz a manuel nievescordones h gyuhwa chung i. The data were searched against ncbi cicer arietinum proteome database updated december 12, 2012, containing 33,000 protein sequences.
An advanced draft genome assembly of a desi type chickpea. Genomewide analysis of the aquaporin gene family in. Full publication details for this name can be found in ipni. Most of these processes are initiated or mediated through auxin. The current release of database provides transcriptome sequence from cultivated cicer arietinum desi icc4958 and kabuli iccv2 and wild. Chickpea cicer arietinum is a widely grown legume crop in tropical, subtropical. Most of these processes are initiated or mediated through auxinregulated gene expression, which in turn is controlled by proteins belonging three gene families.
The following databases on web pages not maintained by ildis may contain information on cicer arietinum. The draft genome sequence of the economically important pulse crop cicer arietinum l. An cicer arietinum in nahilalakip ha genus nga cicer, ngan familia nga fabaceae. Cicer arietinum synonyms, cicer arietinum antonyms. Cicer arietinum annotation report national center for. Chickpea plants can be described as stems are branched, erect or spreading, sometimes. The major goals of chickpea breeding are to increase production either by upgrading the genetic potential of cultivars or by eliminating the effect of diseases, insects, drought and cold. All structured data from the file and property namespaces is available under the.
Pdf molecular analysis of chickpea cicer arietinum l. We constructed cicertransdb cicer transcription factor database. All structured data from the file and property namespaces is available under the creative commons cc0 license. Valineglutamine vq proteins are plantspecific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. The record derives from ildis which reports it as an accepted name record 4318.
Genomewide analysis and expression profiling of the solanum tuberosum aquaporins. In this study, we identified 19 and 32 vq genes in c. In this study, a comprehensive genomewide analysis. However, vq genes have not been comprehensively evaluated in c. The plant hormone auxin indole3acetic acid is a key regulator of virtually every aspect of plant growth and development. Cicer arietinum chickpea is a legume and belongs to the fabaceae family. Its different types are variously known as gram or bengal gram, garbanzo or garbanzo.
Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. Comprehensive transcriptome assembly of chickpea cicer. The record derives from ildis which reports it as an. Dec 18, 2014 availability of the draft nuclear genome sequences of smallseeded desitype legume crop cicer arietinum has provided an opportunity for investigating unique chickpea genomic features and evaluation of their biological significance. Chickpea plants can be described as stems are branched, erect or spreading, sometimes shrubby much branched, 0. Chickpea was domesticated in the fertile crescent of the. It has been reported that the use of cicer arietinum helps in diabetes and cardiovascular diseases and in some cancers. Using sanger and next generation sequencing platforms. The refseq genome records for cicer arietinum were annotated by the ncbi. The rcsb pdb also provides a variety of tools and resources.
The annotation products are available in the sequence databases and on the ftp. Native americans and hispanics historically ate the beans green and dried. The increasing number of legume genome sequences also presents a challenge for developing reliable and informationdriven bioinformatics applications suitable for. Genomewide identification and expression analysis of the. We developed an integrated chickpea transcriptome database ctdb. Datenblatt bei international legume database information service ildis. Unfortunately, cultivated chickpea has a high morphological but narrow genetic diversity, and understanding the genetic processes of this plant is hindered by the fact that the chickpea. The name of the release, important dates, the software version. Ctdb is an online repository that hosts transcriptome datasets with functional annotation from cultivated and wild chickpea.
It is in flower from june to july, and the seeds ripen from august to september. However, drought poses a serious threat to chickpea production, and development of drought. The chickpea cicer arietinum is a legume species in the group of. General information about cicer arietinum ciear eppo global database.
Draft genome sequence of chickpea cicer arietinum provides a resource for trait improvement. Article pdf available in computational biology and chemistry 84. Delicious in soups and stews or perfect for making your own hummus. Network grin, usda, ars, national genetic resources program. This page was last edited on 12 november 2017, at 07. Its different types are variously known as gram or bengal gram, garbanzo or garbanzo bean, egyptian pea, chana, and chole. Cicer arietinum is not known as a wild plant but is believed to have originated in the central part of the fertile crescent in modern turkey, syria and iran. Users can select the specific blast program and database. Chickpea cicer arietinum is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food.
The staple crop chickpea cicer arietinum 2n 2x 16 is the worlds second most widely grown legume. Genomewide identification and expression analysis of two. Pdf comprehensive functional analysis and mapping of ssr. Sharpe, bunyamin taran, rong li, benjamin deonovic, connor cameron, andrew d. Comprehensive transcriptome assembly of chickpea cicer arietinum l. However, drought poses a serious threat to chickpea production, and development of droughtresistant varieties is a necessity. The refseq genome records for cicer arietinum were annotated by the ncbi eukaryotic genome annotation pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies.
Transcriptome sequencing of chickpea cicer arietinum l. Antifungal and antiproliferative protein from cicer arietinum. Chickpeas, or garbanzo beans, are an old word legume that was introduced to the southwest by the spanish. Cicer arietinum and medicago truncatula are common legumes and model plants that have been used to study legume genomics wang et al. General information about cicer 1cieg this website uses cookies our website uses cookies to ensure that we give you the best possible online experience. Aquaporins aqps are essential membrane proteins that play critical role in the transport of water and many other solutes across cell membranes. Cicer arietinum icc4958, clustering, comparative genomics, genome browser, mapping background the draft genome sequence of the economically important pulse crop cicer arietinum l. Untreated cells react weakly, and only in the presence of high. Chickpea cicer arietinum, is an important legume crop in the semiarid tropics and ranks third in total yield among seed legume crops globally, after soybean and common bean. A lectin isolated from the seed of the chick pea, cicer arietinum, agglutinates papain treated human erythrocytes strongly. Genomewide analysis of the aquaporin gene family in chickpea. As a member of the wwpdb, the rcsb pdb curates and annotates pdb data according to agreed upon standards. It is believed to be derived from the the wild species c. Its yield remains affected by biotic and abiotic stresses.
Crystal structure of a plant albumin from cicer arietinum showing hemagglutination. Jan 27, 20 the staple crop chickpea cicer arietinum 2n 2x 16 is the worlds second most widely grown legume. Some lectins having hemagglutination activity were isolated earlier from cicer arietinum. If you use one of these buttons, you may have to use your browsers back button to return to this page.
The refseq genome records for cicer arietinum were annotated by the ncbi eukaryotic genome annotation pipeline, an automated pipeline that annotates. The species is hermaphrodite has both male and female organs. The chickpea transcriptome database ctdb has been developed with the view to provide most comprehensive information about the chickpea transcriptome, the most relevant part of the genome. The website also provides access to a database and images of plants photos and herbarium specimens found at participating herbaria. Its cultivation is of particular importance to food security in the developing world.
Chickpea was domesticated in the fertile crescent of the middle east, together with other pulses as well as wheat and barley. The chickpea or chick pea cicer arietinum is an annual legume of the family fabaceae, subfamily faboideae. Molecular analysis of chickpea cicer arietinum l cultivars using aflp and stms markers article pdf available in journal of plant biochemistry and biotechnology 172. Genomewide identification of the auxin response factor. Untreated cells react weakly, and only in the presence of high concentrations of bsa. Apr 27, 2018 the plant hormone auxin indole3acetic acid is a key regulator of virtually every aspect of plant growth and development. Mass spectrometry data were processed to generate peak list files using proteome discoverer software version 2. Cgwr is an online database offering a comprehensive visual and. Permits researchers to display transcriptome data in chickpea. For computation of chains of syntenic regions, dagchainer software. Files are available under licenses specified on their description page. Its cultivation is of particular importance to food security in the developing world where. The alabama plant atlas is a source of data for the distribution of plants within the state as well as taxonomic, conservation, invasive, and wetland information for each species. Data source and references for cicer arietinum chick pea from the usda plants database.